Scaffold Ga0151517

Basic Information
Taxon OID	3300011113 Open in IMG/M
Scaffold ID	Ga0151517_1345 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011113 Open in IMG/M

Scaffold ID

Ga0151517_1345 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	17953
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (72.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

17953

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (72.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001991	Metagenome / Metatranscriptome	607	Y
F006660	Metagenome	367	Y
F050326	Metagenome	145	N
F099179	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_134515	F006660	GAGG	MSFQTILDISQTITVNNRRMVGQQYSRSGQVRTALYVTSVPWVFTVKPHSFLYYPQVRDVIQTIDNLDRQTAATITFSSTNLQWFTVYQGELSGAQAAALTLASLPAGNATQIAIGNLPAVSSTTIVFKAGDFIQLGSYPYKITTQVLRGSGSTVNATLHRPIIGTPTVGTLTAVGSACTFSVVAEVCPTYTLRPMTNGAFVDWDADFVFRENVQ*
Ga0151517_134516	F050326	GGAG	MSTPMAALSSASITHGEFVRLTTSTATYTFCNAAAPVVANGISFTGLGSLLSVGAVNREIKATSIDMIIGLIGIDPTNVFLVLGSNIKGSTVEVWRGFFDSNYQIITSPSTQFFKRYQGIVSNISITEDWNDNIRSRTATASISCTSFRSILENRIAGIKTNLSTWQQRYASDASMSRVAAISGQYFDFGAPPKSGSQSDPGTVQPAQADVNDISQAG*
Ga0151517_134517	F099179	N/A	MRYATKYDMPHLIEMMKAYADEAGIETLKQNQNEGHVKTLFYEMIKGRGFVLIDDQFRGFLAAYVTSNFWNNSVKELHEVGWWVMPEYRNTSVGGKLWLRFNKLAQDMLDQGRVQVVLTSLMHNSPEIDYTRYKFKPMQATFFRE*
Ga0151517_134520	F001991	GAG	MAVFSKNTLTQVSGFDNQIIAGELVYNQKTYWNLTLNNSDGTPRNLTGATITSQIIRRQLSNVRDSRYGLTFDIADYSPPPSPISLTIANQNLSGGSFTLVIDESAWSVVSTDAQLDINASNPVGFSGNITVAIPASGSTPAQDLIIFLLFLVRSNGVTN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151517_1345

Overview

Ecosystem & Geography

Associated Families

Sequences