Scaffold Ga0151517_1319

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1319
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 18833
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (23.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021016	Metagenome / Metatranscriptome	221	Y
F036587	Metagenome / Metatranscriptome	169	Y
F102573	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_131913	F102573	N/A	MLSYNVIRPTYHDIQISKPLPDDVAEHVLLNYTCHVDHEGFDLNEIEQEYYKYNNISLEHDTTWYKDGEAEKGAHAIILPWIQQNEQTPLVIDHSQFVIRHPLSGAAAEQIKQYAKKRPELLRILSAEFKCGLDLCIDYITSDRVHPIVHIEWDYREFSDMLDDIEYVESCLQDTDWERILPIITRFNYMSKYSLDAFQQADFRSMLLFGRKSYKLIPTL*
Ga0151517_131919	F021016	N/A	MRKLIQKIRIGLLHAAYHRNMRKAETARSNQDILKFKKHVYAAEDAWRKLVILIEKNKQNG*
Ga0151517_131920	F036587	N/A	MGKKSAHTGESPKDRSINIMDKFISKNINRNKNQPFKSGIRKDPNLPIHLWPLKDQIEYWETRSDSDRFKDSYPAYSYWIAEVQKQSKVHPSFFTAQVLKLKTMLQEMFDACTDPREAVRELRKHGVY*