Scaffold Ga0151517_1306

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1306
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 19181
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (60.87%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002149	Metagenome / Metatranscriptome	589	Y
F003112	Metagenome / Metatranscriptome	506	N
F007467	Metagenome / Metatranscriptome	350	Y
F020886	Metagenome / Metatranscriptome	221	N
F055684	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_130610	F002149	N/A	MTAIEYIEKSSVPEAMWPNLAEWFKWFERQGMVGIVKDNDGIAGVALARCIKDGQEPDHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKARV*
Ga0151517_130613	F055684	AGGAG	MWITTENNIIRQPEGIRIGDVNHPASIFWCWSKEQLAEVGIKPYTPASVPAGYRVTGAYTEEVDGEVFERFNLEPIPAPEPEEPVNDAN*
Ga0151517_130618	F020886	GGAGG	VSLDEISDLKDRIATQSERLARMEERQMTLISMIERSLAFHGDVANRLGALEHLRTKVLAVAGLIGLVCSMAWDVLKNRLSN*
Ga0151517_130619	F003112	N/A	MKRIATWLTSLSLRLLLTRSEYACFQEALKFAVENNNMVKETKYIGKVKHLLSVNRSIKRIVEEGRDRDEVVDAVVHLAVALKYLEGKGRES*
Ga0151517_13062	F007467	N/A	VNEKEAWAKFEEGLKDAESFDEAVAWVKKNKKIVEKLTMMAMIRRFNEDISYANKTWRN*