Scaffold Ga0151517

Basic Information
Taxon OID	3300011113 Open in IMG/M
Scaffold ID	Ga0151517_1284 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011113 Open in IMG/M

Scaffold ID

Ga0151517_1284 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	20074
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (76.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

20074

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (76.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010302	Metagenome / Metatranscriptome	305	N
F017131	Metagenome	242	Y
F024955	Metagenome	203	Y
F038086	Metagenome	166	N
F048773	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_128413	F038086	AGGAG	MAITTINNISNTINIEDIQSTKTLSNIKPFDSTLSNIAFGALIAATTLANPSTIVDLKPTILNIVKVDYAKVITPTSVLPFRLTLSNIGIEGYDPANPPGIGIQIIGFSNYIL*
Ga0151517_128419	F048773	AGG	MPTSFDSDGKAAYVYNLADDTWYQVSGKTDISGTFEWTGLHTHLSTLTTADHFNAEKGMNNFLNPAARDAAIPSPAAGTTCLIRQDSGGATVNSLQVYIGGSWTTVLPSPVGQTDKILKSNGTISAWEQAPDAMTQVILMMGA*
Ga0151517_128420	F024955	GAGG	MAVENIGNLVPTKIPALIDDANIQDALKAYHYGSYTFDTAETNTANLLNPSMAYTINDLQEQIDDNATLEEAARDISRASTTAPTAAAFTAFSATIPDGYIWLDKDSSAGVGYYAATSVYTATAPSTNLANGLIWIKKGSSPIEMYVYNGDTSTFDQVI*
Ga0151517_128421	F010302	N/A	VVDVLLNTEDVVVLGPPDSVDVLVDIGPQGTRGNKFIVGSGEPNALTSSGVLLGTTLILNDMYINTAPGANYGYMYQYISQAGGNTWVQVLKINPAIYSAVETVSFTSGSGSITIPISNIVTVSGSPLTASNFSVQFQIEGPNPIASSMEIPALAGAGTNLVINFDAVQYSGGSWSALSGSKTVHIFISIV*
Ga0151517_128422	F017131	AGGAGG	MAFPGSYNFNYYRGDTAEFVIRPKTANGDAFDLTGFNSDFFIATARGETGTQYEAQAVVDGSADTITCTILPEVGRELAAGNYVYDVQIDSSASEIYTVLTGTITVTDDITGAV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151517_1284

Overview

Ecosystem & Geography

Associated Families

Sequences