Scaffold Ga0151517_1273

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1273
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20419
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (52.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002764	Metagenome	531	Y
F023064	Metagenome	211	Y
F086832	Metagenome	110	N
F100720	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_127314	F100720	N/A	MNEAFPHTMEYGAAIEIHVAHHTLAEKVIRVLALVGFIVLALDFLVWRP*
Ga0151517_127316	F023064	GGAG	MNADEIIDNIKFIADKQYEGEPAANRLAYHVGLLESHLRGYIQTAEIAQEYIKELQTQLTAKESE*
Ga0151517_127321	F002764	GGAG	MTPEDEAFDDLAKRQGYWSMQGSRKHQIAKIAHEDVHTHPAEFAYLIRNDVIEEIAQHLETKFAGPFGRSTVESFSMYIRNMKK*
Ga0151517_12739	F086832	N/A	MEMRITPVSLSTERLNLLETLRHTEAQEWLHRFNQKIKDVGKAKATAWWQTTIADIARRRGEPAAEDLRKRMNAIRREG*