Scaffold Ga0151517_1250

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1250
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 21365
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (69.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002135	Metagenome / Metatranscriptome	590	Y
F004430	Metagenome / Metatranscriptome	438	Y
F057336	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_12501	F004430	N/A	MATGAEVLNMLIPTGGWVITGDEYEGIKFLEAEPITKTEFEAGFAQYDARKAEQKTAQAAAKAVLLERLGITEAEAKLLLA*
Ga0151517_125019	F057336	GGAG	MADVDKEREAFLAKIGQAELSEKAPKPTTKKDEE*
Ga0151517_12503	F002135	AGAAG	MATTRKRKKINKRRVRKSPDPLTKLDQWYIAKHEMFRAARKAGFSESVALYLMDSPESMPDWIVGDKGIIPMIPTPDEDED*