Scaffold Ga0151517_1210

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1210
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 23361
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F006841	Metagenome / Metatranscriptome	363	Y
F097194	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_121015	F097194	GAG	MPELLQTIESMQEKERQDKIFLASLQGVDLRDEQEEKGPTFEDIRLRAMGIEATTDDVVSLQGQIAAEAGFGIGAGLGYSKE*
Ga0151517_121016	F006841	AGGAGG	LATTVYDVEEIKLQNGDTAHLKPLTIKQLRKFMAAMTKAQEATTEDQSLTVLIDACAIALETQLPDLVKDRDKLEDALDVPTINRILEVCGGIKLDDPNLVAAAVLAGQN*
Ga0151517_121018	F000258	GGAG	MTVNYKLDAMLELRKYIWTKLQAAEIFNPDDYYSDNIGETLVPIIPVQQIPDMNQFLSGKDHIVYDKIGVSYDTLWLICNEQILFTVYSTDVSKINEVRNFMIDEFRRMDESARDVNLSPNFNSQKFKFHSIHVDDMSPTEPSQEMQGFYSADIILEIKYSRITNTSGRYI*