Scaffold Ga0151517_1188

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1188
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 25592
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (72.22%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001848	Metagenome / Metatranscriptome	626	Y
F002037	Metagenome / Metatranscriptome	600	Y
F006019	Metagenome / Metatranscriptome	383	Y
F007861	Metagenome / Metatranscriptome	343	Y
F009394	Metagenome / Metatranscriptome	318	Y
F019123	Metagenome / Metatranscriptome	231	Y
F030690	Metagenome / Metatranscriptome	184	N
F081079	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_118818	F001848	N/A	MILHYIPKDNLRQHWDYVKHGLELVRQRGHTSWIVEDVYCDCYENRSMLFIGIINNKAVGFVVLQPIGDALHIWITWSTLHDITIFQQAWQEIQAIAKQGGKTKVTFNSQRKGWERRARQMGFKPQTWEYTL*
Ga0151517_118823	F009394	GAGG	MVKNDTDSRLNTHEEVCAIRYEQINARLKRLEQILLGTAGFVIVFLLTHFAK*
Ga0151517_118824	F006019	N/A	MTFITENNIANLYSALIEFPVFDEYKLPPASKVDFVVVHDDTICGQYEPPEAGEPHVITISTAKCGHLDTVIKTICHEIIHMICYLEAPKTEKYTSHKGLFLKLQKRVANTLGYDPKEL*
Ga0151517_118825	F081079	AGGA	MDIAEFLRQLTEQQNTQQNVTSVGNDNLNINAYTRPTLGGNVNAYQETPVGLLSGTVGKEGTNPIYKDIALTNQNFRGGILSQPGDVAPYGEYRDANIMAKVIGGNYPNASAQYTTPLAGGKFTGGANYSKDGLGVNAEYAKQINDWLLKATANANPYEKQLLFGLGREF*
Ga0151517_118830	F030690	AGGA	MQRSEVEIICNHMIGRVIVSCEALHGDSTIVIGLDDDSLIEISGEELSIYGELTPRDD*
Ga0151517_118831	F002037	AGGAG	MNKVYLIFVIVMAALAIWGTEKAIGQTTTILAPDGSVTVCQIGSNGIVICV*
Ga0151517_118835	F019123	N/A	MDSKPLTQEEIIKIYKEAFGKGDQLVTIDRIFRFARLVEQAHGIKNASN*
Ga0151517_11886	F007861	AGGA	MVDKTLEEVKRGEQAAVILENPIYQEALQKVKDSLIASMANSPLGDEKTHNRLVIALQLLNQINKQLTDVMQTGKLAAIQTDRPKFKIFG*