Scaffold Ga0151517_1165

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1165
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 28573
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (22.22%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050992	Metagenome	144	N
F057997	Metagenome	135	N
F062576	Metagenome	130	N
F066595	Metagenome	126	N
F068604	Metagenome	124	N
F075863	Metagenome	118	N
F102810	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_116516	F068604	N/A	MANALRLTANGGCEYIDNTTARTGKKYYCFIVQADTVVGTLTGGLNGDTTTNYLSSIGLSGKTLKQGAIIYAPGDAVFTNLTLTSGTIIAYAE*
Ga0151517_116525	F057997	GAG	MNLMYFIKKRAMENKKQTFKEVFSDMKDLFKDIFQDEIKDLKFADYKAADGTIIRTDTEEIAVGSKLQVITPDGVMDVPVEVTEMVIMVNEQPMKVYVENGVVKGLEPEVMEEEPVMEEMNSNQEFETKFNELNERLSKLEAALGISNTALEAANAQIVAQNDLNRKLFSLIEKVADAPSVEPKSTSKENFKKVNTTTSLEEFRKQVFK*
Ga0151517_116531	F062576	AGG	MMTITIPNTWHEISIDKFPLIYDIVRDKEIDAIDREIRVISIIADIPVHEVERIRIDQLKELIKSVNFIFQMEFPKAVEVFKHNNYRWIVNFDITKLNAGDFISLAKLTESEESIIANLPQLVAIFVKPYKLSWLKYKEVEMDYKQRVEHIKSMNVGIVYPLCVFFCKLIENLYPTIEDYLVNQMKEARETIQRELKEQNSKNT*
Ga0151517_116536	F050992	AGG	MIPENIKEQLLKWEQMGKNYSPTFNWTELNELAIKCGNKPFNLGCGDCRKQLLEYLLAVIKDGK*
Ga0151517_116537	F066595	AGGA	MLQLLATTYIIAKYIPKPKLLMRKPFTCPLCLTYWSFLIYQIINFTTYFDLLTIPFTFALLASLIEQINDRYLL*
Ga0151517_11654	F075863	N/A	MKTQEQAILDALLGGQVITGSNAYAITKKECACGTLNLHKVLAKIREKGYTINECWKQNPKTKVNYKEFTITNKKQKKNGN*
Ga0151517_116545	F102810	N/A	VIDELVNNRIYKQITRNVCHNHYLWEDLHFESVLIIIEKKFDLSEIRNLKHFYSAVCWRTWHSNKFKKKYLTDFVQYVDNLNEVIENEDEIDYSTLINFLSYSPQTESEFYEQNLLKLYIQHGDAKKLSDKTKIPYRTVANDIKQIKEKLKRQHNDKNFNKG*