Scaffold Ga0151517_1161

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1161
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 28707
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (82.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032264	Metagenome	180	Y
F044373	Metagenome / Metatranscriptome	154	Y
F095133	Metagenome	105	Y
F097262	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_116120	F095133	GAGG	MMTNNARDDARAVAGAKNRPYPHYLERVELLLDDVMFRLWVDFEPADRAVGVNATAWIVHAHVGDSPADIADYLNEATILRLESEAADYLSGGD*
Ga0151517_116130	F032264	GGAG	MTDFTKYETQREILIDYLHVMIARCDWHGVADVAMDLRELEAEHREKN*
Ga0151517_116132	F097262	AGGCGG	MKCMTCGERTYVVNVIRMAGGLRRQRKCKSCGAGAYSAEVWLKATANGAEPVYTKEEAALIKKKAVDARRANEDRRKKDAS*
Ga0151517_116133	F044373	AGGAG	MLRDGYFIKEEPPKIGSHYTPQFYQKPTTPEERFVQDVMLGIMPYKESPLTKLLGRLLRI