Scaffold Ga0151517_1139

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1139
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 31394
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019815	Metagenome	227	N
F025724	Metagenome / Metatranscriptome	200	N
F056546	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_113915	F019815	GGA	MAFISQTTRKAPLDQEVSISQPVLGATISQIANGLNHLAFAKGRRSAIAYTSRDNPNSWNYNQSHILADITELRHIPKGNQTYIHLHQSSKNCEHIGFILRYATSDQPISITISLIRNPTTTQDIIDNGCVLSDGNGELVVLPGFKSAVVSSSIDTTGSSTVQTDFSRPLFLPSTYRGELLALKIACVDCKLDMIGSYELYKEQV*
Ga0151517_113940	F056546	GAG	MKIKDRKSILNLYVSTKLISLLDAFSDRRSIKVSKLAEKLMLDGLNRSDLDQVLSIDDDDAIEKITTKIIKELDHGKE*
Ga0151517_113941	F025724	AGGAG	MAKSKAPTTANKSAVKSDTVDSKAGKNSNALTKKPEEDKAEIAKRKRLISTEQVLDFISQGLSQTDALSLVGIAYSTWNGWMKNDPDLVADIKRAEISLKIKHLQNIQRHSENDVRASQWLLARKFPLEFGEKQTIDMNTKGDDSKVIINVIQQVQKEKHGKAIEIKHDLPEIEDQSDEED*