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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300011113 Open in IMG/M |
| Scaffold ID | Ga0151517_1124 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Chunlab, Inc |
| Sequencing Status | Finished |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 33001 |
| Total Scaffold Genes | 44 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (72.73%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Gangwon-do, South Korea | |||||||
| Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003768 | Metagenome | 469 | Y |
| F022860 | Metagenome / Metatranscriptome | 212 | Y |
| F027495 | Metagenome | 194 | Y |
| F033780 | Metagenome | 176 | Y |
| F056573 | Metagenome | 137 | Y |
| F060870 | Metagenome | 132 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0151517_112412 | F022860 | AGGA | MKKFLSYVTENSWTLAGTGMVLITLSGPTLKQALWITGVALVLHSVLTFTIGEDSE* |
| Ga0151517_112416 | F003768 | GGTGG | MAHFAKIENGIVREVIVVGNGDAPTEAAGKAFIASIGLAGEWVQTSYNNNPVEGQDRGKYAGIGDVWNGSQFVSPVSEVVE* |
| Ga0151517_112427 | F027495 | AGG | MKHQETHPTLDVEGCFACRISHVRMSGSAMPTRHNVAQLNMKERALDKDLDAYKRIRKTGGQPTKIDGSAKLEKIAD* |
| Ga0151517_112428 | F056573 | N/A | MSTFRPPTDDFMVLGIPPKEFDSQEVRTAYNLFRHFDAEPRGRNVFLLTNGTYTENEPNDITTIRKVYWGGSDNEVTADEVASLTAAGYGAYIS* |
| Ga0151517_11246 | F033780 | AGGA | MMISPCPWSLVAVHWIDAFDSPNGWINTKEYKAQPQHVVSVGWLWADLLEGYLSVTCSYCPNEDPEMDTVGMVTHIPVGMVQKVVVLGSPQFDA* |
| Ga0151517_11249 | F060870 | GAGG | VDANAALIVAAAVTAVGGIVVAIIQQFRRENHTDHQVVVGLLQVLRKSQQRVEDKVDRVDERLDKHLEFHLDGGMLDNGRTIHQDGVEAISKIS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |