NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151517_1113

Scaffold Ga0151517_1113


Overview

Basic Information
Taxon OID3300011113 Open in IMG/M
Scaffold IDGa0151517_1113 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)34404
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001706Metagenome / Metatranscriptome648Y
F005780Metagenome / Metatranscriptome390Y
F006544Metagenome / Metatranscriptome370Y
F052382Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0151517_11131F005780AGGMSKKDSIALVWCDNGMVDGKFMQGVADVMLKSGVEFGSTLRSQGNQIARQRQTVIDYWYDKTDYEWLLWVDSDVVISPEKFKLLWDNKDVEKRPIITGVYFTTDNPEEPLMIPMPTVFSFVNDGEGCFGLSRV
Ga0151517_111317F006544GGAGGMTTLAAIQGDGWSVIGCDSRSSDDSGRPIDMATPKIVENNGILIAGSGAGRGSNLLQYGWKAPKPGAGENLDLFVTKKFIPAMRKLFIDAGYDMKEDGDAAAHDSQFLISIRGIIYPIFEDYSWDRDVRGIYYSGSGGDIAIGVMEALRVDRVETATQAEKIIKKAISISTKWDIYTGGPIVTKIQYSK*
Ga0151517_111343F052382AGGTGGVSSYGKRKGATFETSVMKWLRSKKVFAERLTKAGSKDEGDIVTMVAGQTYIFELKATKKIDLPKFWAEATVEAENYAKARGLDETPPRYVIIKRRMAGIDKAWVVENLEQWIERNCE*
Ga0151517_11138F001706GGAMGYHWEDHPTEVEGCFGCKVMSLQVNAGDAKRDIPDKKWNSELQAYRDARAQGMQPSGTTRRHVEEAYKASEILGKAYDADTMPKTKDITPKTAAVMKEIGQI*
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