Scaffold Ga0151517_1106

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1106
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 35548
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (63.79%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003803	Metagenome	467	Y
F007570	Metagenome	348	Y
F010832	Metagenome / Metatranscriptome	298	Y
F029676	Metagenome	187	Y
F031404	Metagenome	182	Y
F034568	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_110647	F034568	GAG	MEVKEYGVKKSWDGWRTFAYVSDGIPMGLMPINWANRLFKTKQKAKDFIEKLALNNGWSK
Ga0151517_110649	F010832	AGGAGG	MKDVRYVIDWLEEEIAHFEMSAEQHNYVNKVDEIRYQMAQELLAWILEYKFDPRYSSPVSRETCNSEKEAR*
Ga0151517_110652	F029676	GAGG	MGHVNKIFYSYMTTQDAWDEYLELIKDDEHFAEQWKDTEDDFQDWCESYDIVLVDTKERANQLEEAQLE*
Ga0151517_110656	F003803	AGGGGG	MKKEKTLLRFRIYDGDREYTDYAIIDNEQLLTLNYKEIISKFFYDDKVDNEQCLSDGRAVRIESEIPITYADVIKLEQLSIAFLHDFKLKEVA*
Ga0151517_110657	F007570	AGGA	MKEDIKVIKQYIKTFNDRKLREEYRLYTSLEKPTILENYFKDFIKQEIDTRGIGV*
Ga0151517_11066	F031404	AGG	MHLTVIPSDKQIYLETSDAQFPNRRCHVIDNDQEFWNNVDPRIHAIQYHTDGLKQIEYKNPREDVVITDVKIVQKYIDRFNLTEQTYQAQISWDNNNIQITLADGAKRFETQEEKVARIGPRP*