Scaffold Ga0151517

Basic Information
Taxon OID	3300011113 Open in IMG/M
Scaffold ID	Ga0151517_1089 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011113 Open in IMG/M

Scaffold ID

Ga0151517_1089 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	38127
Total Scaffold Genes	67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	59 (88.06%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

38127

Total Scaffold Genes

67 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

59 (88.06%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001143	Metagenome / Metatranscriptome	766	Y
F005320	Metagenome / Metatranscriptome	405	Y
F042293	Metagenome / Metatranscriptome	158	N
F049625	Metagenome	146	Y
F058807	Metagenome	134	Y
F074881	Metagenome / Metatranscriptome	119	Y
F079803	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_108923	F049625	GAGG	MLSEIDIKDWIEQPSKPLYDVPRETPIKTHIGMLWFKHIDGMYSLCYDDLGKAVHLAAWSTVNPFKKRSK*
Ga0151517_108931	F001143	AGGAG	MSAWLIAIVGVVYAVVAADLLFKGNTGLGIAFVGYALGNVGLYLEAAKP*
Ga0151517_108939	F074881	GAGG	MVFNVEPNEAAFIVRVIGQLPTESGAFPLHQKLVEQFQSQDKQEAATVAAE*
Ga0151517_108940	F005320	AGAAG	LQLSKLKHKLKENEMSIDSIKPVKVAGELYWSNWMKEHNKKFNEANDKYECTLGQLSEAACAKLEELGIKLKDKDTMGKYIVGKSKFLFEPVDEEGNPVDISKIGNGTKCYALVSSYRHKMSAKFGAAPSIKKLVITELKVYSPDGAEATEEETDDIL*
Ga0151517_108945	F058807	AGGAGG	MNVELIKEHENGDATYMFDLTQEEAKALLSYGILEAIKAGIRSGEKITVEGVDLEDISHPGLSD*
Ga0151517_108948	F042293	GGAG	VSNITFEELKEALKRLDEVTLLELLGIQSDDLVDRFDDVIENKQEYLTKEIQ*
Ga0151517_108962	F079803	N/A	MKTEEVTHEHIYERLLAVEAKVDSIERNTQEVVKAFNAASGAFQVLEWIAKAVKPLIVIGAFFGAIWLAIDNKLHGG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151517_1089

Overview

Ecosystem & Geography

Associated Families

Sequences