Scaffold Ga0151517

Basic Information
Taxon OID	3300011113 Open in IMG/M
Scaffold ID	Ga0151517_1081 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011113 Open in IMG/M

Scaffold ID

Ga0151517_1081 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	39296
Total Scaffold Genes	61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	50 (81.97%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

39296

Total Scaffold Genes

61 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

50 (81.97%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001706	Metagenome / Metatranscriptome	648	Y
F006544	Metagenome / Metatranscriptome	370	Y
F008808	Metagenome	327	Y
F009064	Metagenome / Metatranscriptome	323	Y
F011647	Metagenome / Metatranscriptome	288	Y
F050167	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_108110	F008808	AGAAGG	MSKEIPPCPDCGERFENVFEATDHLLEDDEEFDPALVLPNGARLMIGSLLRCLFKYANKPEQIKSITQSTYMTLFTAETQPEAIKDIVEEMIVESQMMEIDDEIKKLLEGGK*
Ga0151517_108124	F050167	AGG	MRTTTQIEDYLASISLTLADLSDELATVRFDEDTVTDYEPRGTILKALPTQTRFKTKSMWVSLGNGKYQHLTGEKGLIAKHSRLSGYTSVVFRP*
Ga0151517_108131	F006544	AGGGGG	MTTLAAIQGDGWCVIGSDSRSSDDSGRPIEMATHKIVENNGVLIAGSGSGRGSNLLQFGWKPPRPKLNEDLDIFMTKKFIPSMRKLFIDAGYDMKEDGDYASHDSQFIIAIRGVLYPIFEDYSWDRDVRGIYYSGSGSDIALGAMEAYRIRSTDDADKAEKIIRKSIEIATNWDIYSSGPIITKIQYSK*
Ga0151517_108140	F001706	AGG	MKHWEYHPEYVDNCFGCKGSTLQMNSGDAKRDIPDKKWNSELQAYRDARAQGIQPAGTTMHHVEAAHKASEILGKAYNADTMPKTKDITPKTAAVMKEIGQV*
Ga0151517_108144	F011647	AGGA	MSSGQRKRHDGWNKSIMRDGVVVILRKDGREKMRLDPKTKEVIKGSK*
Ga0151517_10817	F009064	GAG	MLAVERWLAKFGSTDQPNYAQGKADGKLEPEINANIRANVCEWAVAKHYNLAWNNPWYPNVLHKKRHSLPDVGNNVEVRSVRTQDSIPFWRKDEGKVIIGTKCLDLEYFSEVEIFGAAYPEEFTKPEYYDSYINGWRIPLSGFTHE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151517_1081

Overview

Ecosystem & Geography

Associated Families

Sequences