Scaffold Ga0151517_1067

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1067
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 42740
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (45.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017990	Metagenome / Metatranscriptome	237	Y
F037189	Metagenome / Metatranscriptome	168	Y
F053815	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_106722	F017990	AGGAG	MPYLNKRNRFVAAAKQFADNASNGNPADYSQFTKTELLTIAQSINMKGIPTWVLKDHKSAVSKGVYDLTSLIAPVTV*
Ga0151517_106751	F053815	GGA	MPKEIRCLITNRILQSGEWFWLSWEMDAAISAQGIAEIEIRRHDPDDEFAKLLWNEWEWSREIGNPDL*
Ga0151517_106758	F037189	AGGAG	MPNSKQRVLMKKKKRQHERRKRVRAEALMNAKVGTLRKLDEVGQLPLSVKLKRLPNG*