Scaffold Ga0151517_1035

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1035
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 63284
• Total Scaffold Genes: 114
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (54.39%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007570	Metagenome	348	Y
F009213	Metagenome / Metatranscriptome	321	Y
F013404	Metagenome	271	Y
F100730	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_103513	F009213	N/A	MTKKYYLRTTKNCYYVQEKPNLKVFYSYNTPVALEIDGILKVSENQWTVTTAKHLSWIDNGNKKDRLKPDEFNQLLRQHKPEPDFLKTVSMVSAMFGMMTQSEDKAKVNAQKKRFFDNVQGLNFPEDWDTLPEEEKTKRLEKIENFNLNR*
Ga0151517_103515	F100730	N/A	MKTKTYNSYLDYINSDLNNWSYVELKDFENAKDKKVKVYFDKQDNEVNVVLMNKKKGQ*
Ga0151517_103528	F007570	AGGAG	MKEDIQIIKQYIKTFNDRKLREEYRLYTSLEKPTILENYFKDFIKQEIDTRGIGV*
Ga0151517_103530	F013404	GGA	MIDIKLINEADTKLMNAVNDLDDVLVAQRKIASKLIKEHKQLQEALATMCSNADEDCPPEFRTEHFRSAITNGYDLLKKVGYFKNKKRVYKWDI*