Scaffold Ga0151517_1029

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1029
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 70905
• Total Scaffold Genes: 98
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (52.04%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011825	Metagenome	286	Y
F015302	Metagenome	255	Y
F038982	Metagenome	164	Y
F043765	Metagenome	155	Y
F079586	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_102926	F011825	N/A	MEQHKKSPVNSYYYSEDEWNRLGCGPLPPERDRARQLENVAAKGNPKIDGKNIKGYN*
Ga0151517_102938	F079586	AGGAG	MSVRIESRSGEIDTERCVEHAGGRYDLVIAAAQRLREMKRRARETNSWVTPIDALKEVQSGTFNMTDYLVKVK*
Ga0151517_102943	F038982	AGGA	MSKMSDLLKQALAKKQGTTHIEGDDAPQVERKTAKQRAPVIGKKPPTRSAGRGR*
Ga0151517_102956	F043765	GGA	VNYYYELDERTQKANLEQWHLWCMPNCSPAEGGRMCFKTHDDFMSNSRRVWLENANGVYLVKPHWGIYRGRVDDREFTMIKLRARTIKWWEDESQS*
Ga0151517_102958	F015302	N/A	VSKDEYYANTAARLDTIIGGDTSHYQRLIRVKAEYDDLAKAVPVGQGFLTFYDYVKEYYGVKLMFEGDDLKLAYTVIDDKKYTVFLLKFNK*