Scaffold Ga0151517_1022

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1022
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 84838
• Total Scaffold Genes: 138
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 100 (72.46%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013870	Metagenome / Metatranscriptome	267	Y
F023321	Metagenome / Metatranscriptome	210	Y
F053899	Metagenome	140	Y
F062691	Metagenome / Metatranscriptome	130	Y
F083930	Metagenome / Metatranscriptome	112	N
F091391	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_102231	F053899	N/A	MKRIQNLDEYEVQVTIPDEFQFDGPVPFDMEIAGGIAWVKVIAESMEEAKFKANEYFESKYK*
Ga0151517_102234	F091391	N/A	MAEIYTFTPKQKSKSDNTELERLRAKLLELHEVRDTLNKEIRFTKDAINLLEKGEK*
Ga0151517_102238	F023321	AGGAG	MFFTQSPQFPTFYSWNDIQRKAEEATIKTIDFNKVLVDHTIAYFDSVTDNTFTTYTKKVVNLNKNIAEDAKKIIKSEIKETKA*
Ga0151517_102249	F083930	GAG	MWAYIFTFVCMFFTDIVYTQLLKSVQNDKPLASSIWASAITFLGGVAVINYTTDNTMIIPAVLGAFAGTYVGMKFHLHEKKWHI*
Ga0151517_102264	F013870	N/A	MSNEFKKECGAGYYWCNADKVCKPLKEDAGAMGAPANAVGGGAIAGLGVGPQGEPGVKKRKTATFISFLKRKSNVAS*
Ga0151517_102292	F062691	AGG	MNNVKCFTFKTHQTIMGEVVEDWDTGFALKNPMQVIAVPPRAANDPGGVGFAPYLAFVEEFDKGITFNSEDVLTVNTPVSDLLAQYTRMFSRIEIAPPGLKL*