Scaffold Ga0151517

Basic Information
Taxon OID	3300011113 Open in IMG/M
Scaffold ID	Ga0151517_1020 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011113 Open in IMG/M

Scaffold ID

Ga0151517_1020 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	88133
Total Scaffold Genes	142 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	61 (42.96%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

88133

Total Scaffold Genes

142 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

61 (42.96%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001190	Metagenome / Metatranscriptome	753	Y
F001806	Metagenome / Metatranscriptome	631	Y
F003687	Metagenome / Metatranscriptome	473	Y
F029405	Metagenome / Metatranscriptome	188	Y
F055681	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_1020103	F001806	AGAAG	MDAGVRQKRVEALEKIKNRALNMAKEGRDSFEVRDFVTEAKKELAYELPDEDAFKKAVNVTKAYMSKKQK*
Ga0151517_1020113	F001190	N/A	MTSSVPTGQTTADDYFDIAKFEQLLERLEGSKGRQKRQESLEGRRNIYAQGLASMMSNF*
Ga0151517_102084	F055681	N/A	MIGFSIEFKRWYLVIRGPKGRVYSAFGFANQMPVFTPDKTMTLQEYMDDYDDAIVFTRNGEEIMRI*
Ga0151517_102087	F001120	GGAG	MTKKSPINFDRTIAGFNLTEHGIKSYTKSFKLGPFQLTLNARKSGVLGSISIPGTGLSKRNIKLF*
Ga0151517_102090	F001165	N/A	MTALNDAPKPRIPDAIDSQRLQAMSIVAKMKESADRHGIGFVGGFVDADGNKFVMTNMSDEDTNALIPGDLQ*
Ga0151517_102093	F029405	N/A	MTTQPFDENYNADFLDAWADFAYQQEQAMRESEQSEWDGIDEISSAERNACDYYNERYVISNYD*
Ga0151517_102095	F003687	GGA	MTPKAVERLLTQEARLLARRDNVIDQEIEQQRQAALEIFYKWQDGLTEFQDIVPFCVVLERKVRLNHALIKWEQEHLDD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151517_1020

Overview

Ecosystem & Geography

Associated Families

Sequences