Scaffold Ga0151517_1018

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1018
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 94854
• Total Scaffold Genes: 113
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (58.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012760	Metagenome / Metatranscriptome	277	Y
F021985	Metagenome / Metatranscriptome	216	Y
F040538	Metagenome	161	Y
F043837	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_101815	F012760	AGGAG	MKIPELVYEIRNLARKEEDPLKKDLFYQCAKSLEILGNIAKIADLAVAEHNSAETPAINEDETIKWNIDDVTLKMLDEHIDALVHYGFMNKDDRWPYGDQPFTKFVSKYLKSQIVNDSSME*
Ga0151517_101817	F040538	AGGA	MEITNVDRPTKIQRVFDYMRSGAPMTAGEARKRFRVQNMRATMHDLREAFDRFDLNYTISRTTRNGRSYYKIVRSR*
Ga0151517_10189	F021985	N/A	MEGDSKKISHLYAILFREAKLILSNYEKYLQDKLTSKELAQKMLSLRDAIQRIEEANK*
Ga0151517_101899	F043837	GGAG	MVKRIKSRYGDERIITSLKNGRYKIEGRTLYTRHGDGLFDFEGGPCYIVGDRLLDVKSNPIIEKIEIDQNVVDKDYAAVILHTRKAQ*