Scaffold Ga0114947_10485623

Overview

Basic Information

• Taxon OID: 3300011112
• Scaffold ID: Ga0114947_10485623
• Source Dataset Name: Deep subsurface microbial communities from Mariana Trench to uncover new lineages of life (NeLLi) - CR02 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 876
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Mariana Trench
• Coordinates
  • Lat. (^o): 12.6311
  • Long. (^o): 144.7214
  • Depth (m): 6844

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081398	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114947_104856231	F081398	N/A	MELTMRLCFSVCLTLWLVLAVGHAGVMIVVIDGSDRGVDSPSRGAGGRAAWNASVAARNLTSETDNFDGVDIDIPVNRLTRVGHFSVYFEQTGGYSSQAGNTAPDPHPTGVFVGTTGTGSGANAETIDGLELRFETLGPVTGTLELRFDPPIFAWSADIYSVDGVGFGQGLGPDSNDHTT