Scaffold Ga0138578_1195604

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0138578_1195604

Scaffold Ga0138578_1195604

Overview

Basic Information
Taxon OID	3300011110 Open in IMG/M
Scaffold ID	Ga0138578_1195604 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 65 (Metagenome Metatranscriptome) (version 2)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1332
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.13	Long. (^o)	11.88	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016550	Metagenome / Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138578_11956041	F016550	N/A	DQEKATKEIKKITSISVDSNMRSVVNRSMAEMLKAKRLDLVKERQDLNVNYGGLFLVHQLTAGGAKMEDIAAQLKAGKKIFDIANDDHANWKQINSDAKKLNKKIDDNIAKYFMDSKKLAALDQTDEYDAKADKVAADSDISKDEYADAQSRYQHLHDLASSQSPTGDANGINQGPGVAPAVASGGKR*
Ga0138578_11956042	F016550	GAG	MTRFFVLVFTVAVAMTAFADDQEKATKEIKQITSISVDANMRSIVNRTMADMLKAKRLDLVNERHDLNVNYGGLFLAHQLTAAGVKMEDIAAQLKAGKKIFDIANDGHANWKEINSEAKKLNKKIDDNIEKNFRDAKKLAAVDQADQYDAKADKVSADSDISKDEYTEAQNRYQHLHDVVSSSQLPIGDANLRNSGAGAGSTSGVSGPPAAVIGAK*

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