Scaffold Ga0151489_1626393

Overview

Basic Information

• Taxon OID: 3300011106
• Scaffold ID: Ga0151489_1626393
• Source Dataset Name: Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1085
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location

• Location Name: Laval, Canada
• Coordinates
  • Lat. (^o): 45.54
  • Long. (^o): -73.72

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008907	Metagenome / Metatranscriptome	326	Y
F028451	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151489_16263932	F008907	N/A	MSEHEKFTVPHEIEEILDRLPPQVTLHVPDHILSRWFPPGPANGVMEGRALARALSYAKSCACEFAYHGDRGEGVFSKAIPSED*
Ga0151489_16263933	F028451	AGGA	MFQIVRLALDDNGEVDARRPLQPLFELREDAMAMAEFDASRLWGDYGCDDERD