NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138555_1157975

Scaffold Ga0138555_1157975


Overview

Basic Information
Taxon OID3300011075 Open in IMG/M
Scaffold IDGa0138555_1157975 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 36 (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)727
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001953Metagenome / Metatranscriptome612Y

Sequences

Protein IDFamilyRBSSequence
Ga0138555_11579751F001953N/ALFAVLAMILMLGGNALASAPVNQGDGSVYFVTYYSNANTAGVPDATLRIVNDGDATCIATDSSKAICEFTDDVGGTLWAAIYVFDDSQEMRSCCACQITSDGLLSESVNKELTSNEFTGRGEMTRGVIKVISSVSGDPTAPVPIPGLRAWFTHIQATTSTFPAPGPGAPVNVVEKGPWFVTETALADSNLSPTELGNLGALCSYGLTIGSGYGSCPCTIEDYDF*
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