Scaffold Ga0114934_10118094

Overview

Basic Information

• Taxon OID: 3300011013
• Scaffold ID: Ga0114934_10118094
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1276
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Pelagivirus → unclassified Pelagivirus → Pelagibacter phage HTVC121P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5275
  • Long. (^o): 25.4914
  • Depth (m): 482

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002613	Metagenome / Metatranscriptome	543	Y
F026714	Metagenome	197	N
F043623	Metagenome	156	N
F056144	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114934_101180941	F043623	N/A	DDPTLKQAQTFVKGWVERLVLSTGVLLVDEEARMKRGMKRNKAASFLANKDGYPNILGPAIFIPYEIQSQWF*
Ga0114934_101180942	F026714	AGGAGG	MAHTYKKLTVYLNEEQEKVLTDFDLKIIDKDDFDLLHYTVGIISKRLAETNHKMITDVDPNKCDPATLQYSSKTIG*
Ga0114934_101180944	F056144	GGAGG	MQRIIYRGYDIVEYDTQWKVELDNKSIATFDKQEGVSGEASCMCEIDRIYRNDRKEIDANIQRVDAQVKLDNKIKKARNIC*
Ga0114934_101180945	F002613	GAGG	MLKAIWFALHFAIIMMGAIITIHFDVWLGLAIMLVFAVKFAFMIPNREEL*