NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114934_10038795

Scaffold Ga0114934_10038795


Overview

Basic Information
Taxon OID3300011013 Open in IMG/M
Scaffold IDGa0114934_10038795 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2517
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5275Long. (o)25.4914Alt. (m)Depth (m)482
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001611Metagenome / Metatranscriptome663N
F002374Metagenome / Metatranscriptome566Y
F009559Metagenome316Y
F039389Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0114934_100387951F002374N/AMDQVLLYVSVFLASVSFFLCLYACARVGKLLNSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAMKQQNNVHDINKNNLGG*
Ga0114934_100387952F039389AGGAGGLAFLGDFGKFFGLGSSEQVLGNVGGKVGSLVGLEGAGRRAGEFIGGATSSLSTADQPLEQSAVPTGDPKQGRAQETSRSGSQTTNIIDVGRGTGMQNQLGLGLLQPLLQGAGRFLGSKTGQIATGVGAGALFGGMSQDGRMKPVLTQSRRNKAKVRQLVNFMGIEGTADFLSQSSGNNVTPNDVVMLLLRTFRNDGAFITKAQVRNLRRTTNRFKSLEKQVKEAVSMGKTTRRATPMRRAASTTLIKN*
Ga0114934_100387953F001611AGGAGGMPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVSGQPFGVLNGAYINNDLLTTGSQRNRVLVRFTNDTGATRTIRCGVFIGG*
Ga0114934_100387955F009559N/AMDQVLLYVSIILASVSFFLCLYACARVGKLLNSVKGLDWDIIASLTGDIGTIKKSIQT
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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