Basic Information | |
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Taxon OID | 3300011013 Open in IMG/M |
Scaffold ID | Ga0114934_10000021 Open in IMG/M |
Source Dataset Name | Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 77441 |
Total Scaffold Genes | 111 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (32.43%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
Source Dataset Sampling Location | ||||||||
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Location Name | Kolumbo volcano, Aegean Sea | |||||||
Coordinates | Lat. (o) | 36.5275 | Long. (o) | 25.4914 | Alt. (m) | Depth (m) | 482 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001040 | Metagenome / Metatranscriptome | 795 | Y |
F020797 | Metagenome | 222 | Y |
F081779 | Metagenome / Metatranscriptome | 114 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114934_10000021102 | F001040 | AGGA | MAATRTKYSMQTRIRYKGNLVDVLDRIRAIRLVLMVHIEQDLGKGAELVTMKIMTPYPPRHSYHAIRKLCLGKIETLEEMQLLETTLTKLQ* |
Ga0114934_100000213 | F081779 | N/A | MSKEEVKYIVFAEDSTAMMQESLIQQSNPLTKERAIEFAERIKDRDNLFCVTILKRVSKEELKPKEDE* |
Ga0114934_1000002149 | F020797 | AGGAG | MIKLENILKSIPNQEIVESELGQWEYPGRITRIPSNTITMQPDPRTGKPIEHILLIIGDQSGEKKIGIPGGPNLFFPTDTSVTEYPIKRHM* |
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