Scaffold Ga0150979_1118393

Overview

Basic Information

• Taxon OID: 3300011012
• Scaffold ID: Ga0150979_1118393
• Source Dataset Name: Marine surface microbial communities from Baltic Sea. Combined Assembly of 24 SPs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Berlin Center for Genomics in Biodiversity Research (BeGenDiv)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 828
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Marine → Marine Surface Microbial Communities From Baltic Sea - Bioacid_Cyano

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 57.32
  • Long. (^o): 20.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028680	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0150979_11183932	F028680	GGA	MMTIKLSGQGGMETSLPRSGARAARGFALLSLVGEAVHNFEEGGFRASDAVLAGMDLSVLDGKGSVTGVARAAWGVATGGTELFLFGATGLFASKLAFGLGAQSGGLAFPGAFSFLTKRSTVWFGGSAGGSAHGGTAHGFTGWAIVHLAHFLGAADRAYGFFTVNFTFSTFRRFAVHLALGASANGVAFGGTHWVVTQPFALRVASGGGSDGHKSEKS*