Scaffold Ga0150979_1108000

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0150979_1108000

Scaffold Ga0150979_1108000

Overview

Basic Information
Taxon OID	3300011012 Open in IMG/M
Scaffold ID	Ga0150979_1108000 Open in IMG/M
Source Dataset Name	Marine surface microbial communities from Baltic Sea. Combined Assembly of 24 SPs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Berlin Center for Genomics in Biodiversity Research (BeGenDiv)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1072
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Marine → Marine Surface Microbial Communities From Baltic Sea - Bioacid_Cyano

Source Dataset Sampling Location
Location Name	Baltic Sea
Coordinates	Lat. (^o)	57.32	Long. (^o)	20.05	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030017	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0150979_11080003	F030017	GGA	MDKIKALYLEGLTRKKIAKALGLDDQKVGYLLYTKMKLHEIYPRKLMDENIFNILTDHQISRILTLATYGYDCKEIAEDQKLEFRKVRKLLNVAEAKKMIEKKV*

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