NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0139556_1034338

Scaffold Ga0139556_1034338


Overview

Basic Information
Taxon OID3300011011 Open in IMG/M
Scaffold IDGa0139556_1034338 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Top - Depth 1m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)745
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)41.825Long. (o)-82.975Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035193Metagenome172N
F064395Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0139556_10343381F064395GGAGMNDEDRSNLRDLHAGFALIGLLMNTKGGIVEDVAITAYRFADAMQEARDQHSVGIVSVKRQT
Ga0139556_10343383F035193N/AVRKVNNDYIVYVADGFHRIYTDETLPDVLKSKFAMILANGGSYLSDSKVLRLSLYTNTYAPELDEVGWRSSDTYFCLVLDRLTLESLKGGTLDDA*

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