Scaffold Ga0139556_1017455

Overview

Basic Information

• Taxon OID: 3300011011
• Scaffold ID: Ga0139556_1017455
• Source Dataset Name: Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1033
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.825
  • Long. (^o): -82.975
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032950	Metagenome	178	Y
F089862	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0139556_10174551	F032950	N/A	MNTLIKFIIAAACAASLMYFDSLDNKPKEKTNVGNNRMGNSDRDFRVRIGNLRLHRICVVPTKQGTRRVKCPVCEWTRTLDNRYVCKKIERIIVATQIKKRKNYGMERTNHQVR*
Ga0139556_10174552	F089862	AGGAG	MSIALEITELINRIAPPKDIAGGFMSRNEIIELIDKVANTAVAIGWTHGESTTRKRLEKKIEVMEQEMVIIKEQMKALELDLLVAESK*