Scaffold Ga0139556_1006041

Overview

Basic Information

• Taxon OID: 3300011011
• Scaffold ID: Ga0139556_1006041
• Source Dataset Name: Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1767
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.825
  • Long. (^o): -82.975
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008552	Metagenome	331	Y
F021537	Metagenome	218	Y
F024557	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0139556_10060411	F021537	GGAG	MQTREQKLVYLKKTIETLWHGVSDTKEGDYPRIISLYKEVLMHDYHDADSWENMVWLM
Ga0139556_10060412	F024557	N/A	MEPTVWIYFSKTCTGYELKGSDVISGFDAFINMDGTYMVEYAFSDMKSSMHFFIYEWDNSQKKRRTVFESYKKELVLMGMVKHIDKIPLPIAQKILSMYVNDEEELELEKNANS*
Ga0139556_10060413	F008552	N/A	MGYNMPVMIISFEASASVDSTLFGYFSMEYDPEFFSDIKENLTDIPKSKPLAFKLDIDNVKLLQGAFHNIRRIICIPDIEKQKFTYVFKRNFEKGTAKKFKYTKLHIDKDYFYFTGHHENADGTKPVEFQSLNFDARFIDTIQNQYIKHQENMVN*