Scaffold Ga0139556_1003396

Overview

Basic Information

• Taxon OID: 3300011011
• Scaffold ID: Ga0139556_1003396
• Source Dataset Name: Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2374
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.825
  • Long. (^o): -82.975
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009749	Metagenome / Metatranscriptome	313	Y
F011754	Metagenome / Metatranscriptome	287	Y
F042301	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0139556_10033962	F042301	AGGAG	MIKVGSKWVGNGDNIFRVIHVIELDGHTWVHYIKDNAPEDSNREYSCYEESFLSRYREIPRD*
Ga0139556_10033963	F011754	GGA	MKMGFSLGRCVRDIVKGSVDINDVAFIIAATSIHDEPQLANVIDQYMNRDDDYLYGLDKDKCQAVALELWSTNKILQPRRQGLHRHRQPENSVWVDMFPTELSKNKSVKTAWDAYRFMLHMVENVDNEAVEVFKQ*
Ga0139556_10033966	F009749	N/A	MYSWILIVAMYSPAGDFIGKDTMKFESQKACESAKTQLPNLDYPLRVKHKGLCVTRDHWEGKKQMPGVAYD*