Scaffold Ga0139556_1000272

Overview

Basic Information

• Taxon OID: 3300011011
• Scaffold ID: Ga0139556_1000272
• Source Dataset Name: Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8873
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.825
  • Long. (^o): -82.975
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037064	Metagenome / Metatranscriptome	168	N
F041011	Metagenome / Metatranscriptome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0139556_10002723	F041011	N/A	MLVEADSAEKALDYVRSTITHAETPYPSWSDWHGGLGEGLAGRWSGLFLGWEENRDVLCYTENKVLADDIIKEFVSYRITETKNLWDEMKKGNGFDVEKSISEYNPYEQKFNDSGMNMWRLQKIAKILNNDWCSDTGVYDLQEHTANLEYFKGRLDKNPEKQYLVPVDFHF*
Ga0139556_10002724	F037064	N/A	MERDESKFVIKYASHMLPSLAAGLTRHDACFYAGEGHIATVLYEGFAVDIYCDGDTKIYNPKTEKYYTGGADLILGGFDTDAKFHKATGSYGDESLVMDMNSWFDLYCYGEHLDAVSHMLNEAIDMAKEYVYEECFNAETLLDMLDK*