Scaffold Ga0139557_1007934

Overview

Basic Information

• Taxon OID: 3300011010
• Scaffold ID: Ga0139557_1007934
• Source Dataset Name: Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2154
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.825
  • Long. (^o): -82.975

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005879	Metagenome / Metatranscriptome	387	Y
F028509	Metagenome / Metatranscriptome	191	Y
F058141	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0139557_10079342	F005879	N/A	LNVNKKIMIDNKIFWADDFDGANAKGGIYVRSFDLKKFLELVEANENGNGGEVVGLRFDGNNLEVLVKGLED*
Ga0139557_10079344	F028509	N/A	MEDKIKVSIVIQSMLTDAMVEVHHQELMEEGQERLRFVKYLIHHYSNTNQDILVDFVYEQFKKFDNK*
Ga0139557_10079345	F058141	N/A	MTILTHTNNMKIRIENIECRFAQNQYEFVRWYPNKYFGTKAQLIAEGYELIVSQDDDFSLVKHNHHIHGSCFQSPESCFTIATIVYDKNEHCTEIKSVGSRLLGLTKKERNYFFEVYHYADKQIKKENKNKDND*