Scaffold Ga0139557_1005916

Overview

Basic Information

• Taxon OID: 3300011010
• Scaffold ID: Ga0139557_1005916
• Source Dataset Name: Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2544
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.825
  • Long. (^o): -82.975

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001957	Metagenome / Metatranscriptome	611	Y
F028512	Metagenome / Metatranscriptome	191	Y
F044967	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0139557_10059161	F028512	N/A	FRSERMNNALKAIAVEADAPEEVLNTLWFSIFCQKFAHLLIEELEKNCEQE*
Ga0139557_10059164	F044967	GAG	MKKRNWPNNNGETPMEIEMIEKTKDRFDLEQEILECWKVTNDIQMYVDQGAVTEDFKVLIDYYERKFNCLWETFESMVHERKM*
Ga0139557_10059168	F001957	AGGAG	MNSVDMATNLIFRAKNLQEFVVTTELPNDFGFRGVIPFDMQITGNILEARVWAVDFNEAVDRLNEFLQNDD*