Scaffold Ga0139557_1004723

Overview

Basic Information

• Taxon OID: 3300011010
• Scaffold ID: Ga0139557_1004723
• Source Dataset Name: Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2883
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.825
  • Long. (^o): -82.975

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003304	Metagenome	494	N
F011281	Metagenome / Metatranscriptome	292	Y
F011753	Metagenome / Metatranscriptome	287	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0139557_10047231	F011281	GAG	VSEAFKQKVLSASVDRYVLTPTQCAMLRQDAEVMGMKRATVMNKDGTTRKSFARSCSSCWVPFATHYEWIYKVMRELTDSINADAWRFDIQGIQQLQILKYNPLQQFWWHYDTFTGSDRK
Ga0139557_10047236	F003304	GGA	MEKRKMKKALVTQAFGDEWKKILDLTKPRMEAYCQRHQIDFIALEKPLTDPVQYSKSAIGNIMATKGYDQVTFVDSDILITKDCPDIGEDAGVFCAFDEGAFLDRKLAMGKLAGTFGAIIDPRFYVNTGVFVISSKAVGALSMPPLGLLPNHFAEQTWMNIMVHIWNIPLTELDPVYNCMTSVEEHFGLDRYTDAMCIHYAGQSNNMTNLTNMIKSDDAKLVELGR*
Ga0139557_10047239	F011753	N/A	GRCDAYVKLRGIGDAIIDLKNRRVNPRYSPFYEHSDTPQLWAYKNASENPKAACVSIVLASNDSSKIMTRTWDDDELYQSGIAFQAMLKIWCWVKGYTPPGCKL*