Scaffold Ga0139557_1004539

Overview

Basic Information

• Taxon OID: 3300011010
• Scaffold ID: Ga0139557_1004539
• Source Dataset Name: Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2953
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.825
  • Long. (^o): -82.975

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016365	Metagenome / Metatranscriptome	247	Y
F074452	Metagenome / Metatranscriptome	119	N
F080943	Metagenome / Metatranscriptome	114	N
F083781	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0139557_10045393	F016365	AGAAGG	MNAMEKLVLATAAVVYGMTAQLPANEAVKETQDAINKWYETASTSISQDVTALGVTVSNMPEKISLGVSNFVDETVAYQKETWAETLKFEQEKQNWATIKGWFTPATDGVKK*
Ga0139557_10045396	F083781	GGAGG	MININREKFEKEILDLAKKGNGNSPSFTGGSLYAEMIDQDHAELLRADLEDFANANWGDGTRTSPYSTSVKMYKLADQNGRTEFVYDFVPSATAEDLPPEVDMMLCLEAEIAGGK*
Ga0139557_10045397	F080943	AGGAG	MISDETKIRLRELEGQRITLEDELERLAYTNNFARISKLEGELFDVKDSIKKITAGHWFEDISRAELLKEEATLQ*
Ga0139557_10045398	F074452	GGAG	MIPDNKSFGRHGAGLGRDPFVRAEISETQRAQDYWEMSYVDEDNRIRYRLSCVLVEEEILDLLYCHGHITADQQAATINQARRADDK*