Scaffold Ga0139557_1003686

Overview

Basic Information

• Taxon OID: 3300011010
• Scaffold ID: Ga0139557_1003686
• Source Dataset Name: Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3323
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.825
  • Long. (^o): -82.975

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006220	Metagenome	378	Y
F007310	Metagenome	353	Y
F070110	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0139557_10036863	F070110	N/A	MFSLDMPIVIWFIEKKKDYYVLLDSCGQIVMRRDEKRKNEIYKYCEENGIDLQEEF*
Ga0139557_10036864	F006220	AGGA	MKHKKYNEELNLASGTEMMRASRQRPLVFKDKTKYTRKDKHKNRQDKSSGDSLFVG*
Ga0139557_10036865	F007310	N/A	MRQVYWNNTERWNNHHHYETLIEDLTGFNLQKDLCAETVKYMAKRLKDTPYQRRFKSLYTIYENEYNVLVDKFNSEADNNGMIGIK*