NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0139557_1003418

Scaffold Ga0139557_1003418


Overview

Basic Information
Taxon OID3300011010 Open in IMG/M
Scaffold IDGa0139557_1003418 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3438
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)41.825Long. (o)-82.975Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005293Metagenome / Metatranscriptome405Y
F010317Metagenome / Metatranscriptome305Y
F035631Metagenome / Metatranscriptome171N
F038644Metagenome / Metatranscriptome165Y
F041755Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0139557_100341810F005293N/ASDTHKEINGFRPRPNWSELSYEQLDRWGRSLAADAVTYRKQEVVRNRIARGLRRAQQRAWVEKKRGYFTSGSFTVGDVVKF*
Ga0139557_10034186F041755N/AMNITAAKMSGEEILAKYPILNTKWKYSNREYDWNGYDGYYYSNYKDWSTEVVTDPWYRNLINNGNPINTTESESIFFTSVEGKKVILVIYLKTYV*
Ga0139557_10034187F038644N/AMMTIKITQLPNGPWREYALEAQRRGIELVSDCSLSGTDVILIGAIDMIRELTEKIEKKTE
Ga0139557_10034188F010317GGAMKQIYIEKLAEVPGGLPAIKMEEHIMGEPPTDNYNSIPIEYNLEGYLMYEIEVGKSVFVDRTKRNGVEVRGVFTTSNVTEIGDNYFKTRNSVYSYKFL*
Ga0139557_10034189F035631N/AMLRVYSFETMNIEKTFKLTIKDTSFYLDATEINALYNECGKALNIGNTNPSYPPGVTKQPSDYPSWPQPTDYPSWPTSYPFGTTTDYPSQYCHSDMTTDNFEFDSNTSLNPKSSKGINFIKDDMTTIKDNTIKDCDNWRSSVQKSLDKLSAKTNGTTIR*
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