Scaffold Ga0139557_1002406

Overview

Basic Information

• Taxon OID: 3300011010
• Scaffold ID: Ga0139557_1002406
• Source Dataset Name: Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4170
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.825
  • Long. (^o): -82.975

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004547	Metagenome	433	Y
F006019	Metagenome / Metatranscriptome	383	Y
F009394	Metagenome / Metatranscriptome	318	Y
F081079	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0139557_10024063	F009394	AGGA	MVKTDTDLRLSTHEEICALRYEQINARLKRLEQILLGTAGFVIVFLLTNFTK*
Ga0139557_10024064	F004547	N/A	VKTLVYFTVLVVFWLLLMDTPLAKELVKEMSMATEAGEIVLTSEECTFKKQGLQGYDYAAYATERGHPNHEGCWKSDSYEGKRAVYIYFPEINQTAVFDAKLFKPXXXRVPCL*
Ga0139557_10024065	F006019	AGCAG	LTLNYLSXXXXEFPVFDEYKLPPASKVDFIIVHDDSMCGQYEPPEQGEPHVITISTARHTHLYPVLMTLAHEIIHMCVYLDSPKTDRYTSHKGLFLKLQKRVANHLGFDPKEL*
Ga0139557_10024066	F081079	AGGA	VDIEEFLKQFVGETNTQPNVTSLGNENLNVNAYTTPNVGGNVNAYQETPVGLLSGTIGKEGTSPIYKDVALTNQNFRGGILSQADNVAPYGEYRNGNVMAQIMGGNYPNASANYTTPLAGGQFTGGANYSNQGLGVNAEYAKQLNDLLFKARLSATPEERQILFGLGGQF*