Scaffold Ga0139557_1001447

Overview

Basic Information

• Taxon OID: 3300011010
• Scaffold ID: Ga0139557_1001447
• Source Dataset Name: Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5474
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.825
  • Long. (^o): -82.975

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F005584	Metagenome	395	Y
F008741	Metagenome	328	Y
F009142	Metagenome	322	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0139557_10014472	F009142	N/A	MNNSVQINVEDALDNLLANIPNLNVYKTNRIGAKLFPFATISASVGGQLLGNYTGVYEVSVTIDYSDTAAKISQEAFDSEYCSIFEAFYSETPPLFTKIQNNIVDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPSELDDGLRFLDFSEQRNSMYVGVI*
Ga0139557_10014474	F005584	AGGAGG	MAGTIDTSYFSTDLQFMIADMFQTVTGLGSSAVSASVTDLTTASELEIGGEVFRVTQSVVVLASAISAPTIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT*
Ga0139557_10014475	F008741	GAG	MSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCFAQYQGVFDLTSYVKAGHRQGDVIDLEVWPNQYEAYRKSRRSWTDFVYSHPEIKDADKTNIVLDKLDDKPAEGLPETYNLVAPFGLSQGYYRNPLDLIVRARQTMGKDSFFVLCPADIKIQGLNTYTATSVEQMAKAIRGATDFWAINSTPIILASATRKDKQTGFFPQKNEWETDNIFDFEGLTRMD*
Ga0139557_10014478	F003049	AGGGGG	MKNAKQVIGCRKSKKGEDIKGLGVIKFGKSRPDPTKYVKVDITYDEKAEKDLYECGMIALKHDKEAVIQYVIVKALTGYAKCKK*