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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300011010 Open in IMG/M |
| Scaffold ID | Ga0139557_1001128 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6219 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (53.85%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 41.825 | Long. (o) | -82.975 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026543 | Metagenome | 197 | N |
| F026550 | Metagenome | 197 | Y |
| F035669 | Metagenome | 171 | Y |
| F041645 | Metagenome | 159 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0139557_10011281 | F026550 | GGA | MAQSLDIYIDTTNGSLVAAGSARNGTLPTLTRNDSYNLRVRLQERDSSGFLRDLDTAGSSLKVGIGSIDGDPTDGQFKLVLNSVTSTAISFNATTTQLYNAISGIAGTGVGVATYGQELFAYLITSATANTAMSFGGDAFTLFPTSSVLISTRRFPKSSVAAQQVIRLVRNPAVFSDTFVASPTAGVISLTKIQDGSATQNETYDLAIGSDAEGGSVVLNYGTESTTAIA |
| Ga0139557_10011282 | F035669 | N/A | MRENKINELQGTSILTKEFFNKLIRRIECTKPLAGSGITIKEQEDGFQISSGDSIGGGGVAEYSAITLNVCSDGIPAQILVLGKPVEE* |
| Ga0139557_10011283 | F041645 | GGTGG | MASVVIGSAIGATTRSKALQRQNFSKEPNGLETIIEAYAIQTINRDTVVPEKNTVHSAFSSSSKTYERMVVESVNTEEQDGGITQMLVTYVGLTTPSGLPPPIVRLIPAAGEGVYGPPLVIEAEYVTDVDETQFMAGQLAQNNATQPRGLFTTVIKMPPFINGTAMPRDPRTAFFSAPSGAFAVGIIEQYSGYCVLSKSCERRGLFLVARDTFHEVQQIATIQ* |
| Ga0139557_10011289 | F026543 | N/A | MTEAYWGTTNIKVASAVASFGAKPRQLDPVTRTIKEDGSTQATFWFEAGAGAEAKAEMERPWSEMKSDPESPIRYVRAALENRETFLGLLKRAVPVRVIQRGGQTLLISENATSEQRRAILKHL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |