Scaffold Ga0139557_1000976

Overview

Basic Information

• Taxon OID: 3300011010
• Scaffold ID: Ga0139557_1000976
• Source Dataset Name: Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6717
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.825
  • Long. (^o): -82.975

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031764	Metagenome / Metatranscriptome	181	Y
F054858	Metagenome	139	N
F058818	Metagenome / Metatranscriptome	134	N
F066775	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0139557_10009761	F066775	N/A	MTKNESLEIIKAALIEKRDAVELACEALGKEAKEEKKAIFEELFAEELLSYADVAVEVGYSGIVFKVGYKEIGSINERSYWRDEDKDKKYYFNTYSTMCEDEFEFKRLIFNGKIALRMWFDMDSIREAFMIPFSKKELYDALSQDLNILSGEIKQKEYQMHEVRRQDIIDKLNGEGIEWTTNKCFEFNRQWTSYLVKKVRIVKATKSGKTVDLEVTYALYDWSYDDEGNSMRVEKEDRIATHEGIKMEYVMGNFRDLIYIY*
Ga0139557_10009762	F058818	N/A	MIKELKKLQNILHDMAAELYGDLWIMNDKFWNSPTERQLREVTMQLIDLGVTIDPSDEQREAAKIIAKKFGFELPPED*
Ga0139557_10009765	F031764	N/A	MQKQIQETINKVSTSFPSLFSREDVIKLLADLNAEMQDEAPKQVIDKDVLLTTFRQMLSEKDWDHLVDKDDVELSIGYDNKIEVDRIAINEDYLIDEAVDALESLWDALEELVNED*
Ga0139557_10009769	F054858	AGGA	MNKKEQRMAITRAFRAKLVETQGNGFSFIEDDVMLIFDFIKDGVAYMGLEYHRGLGEVFNPVRRWAEGHGDNTKHFAYEAICDELNDELEEIRAKVEEQAMFEKINKGLGIQK*