Scaffold Ga0139557_1000551

Overview

Basic Information

• Taxon OID: 3300011010
• Scaffold ID: Ga0139557_1000551
• Source Dataset Name: Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8941
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (62.50%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.825
  • Long. (^o): -82.975

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006658	Metagenome / Metatranscriptome	367	Y
F018714	Metagenome	233	Y
F034175	Metagenome	175	Y
F051884	Metagenome	143	N
F058143	Metagenome / Metatranscriptome	135	N
F071226	Metagenome	122	N
F093863	Metagenome / Metatranscriptome	106	N
F101131	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0139557_100055110	F071226	GAGG	MMTERAQNFMNEVWNIRNSNDCMTEEQLLSAVLKLAAEQVTSYNAQNDMVVLDKNDLLQLSAELCL*
Ga0139557_100055122	F093863	GAGG	MTNLINKLLARFGFQLVYIKPNVSLVEASVKFLNENPKFVSDQVKPNDFYWGDINYVQKRVDGEFPQVSGETYYKSQHSQYEKYFCDYNADEKTLSKEDLKKIYDETTFTTEQLKNKLE*
Ga0139557_100055123	F058143	N/A	MIVERTADLQILTDDKETYYRISYNDQFSYVSWFRREYSILYPVDTALYDVLTKKYFEVSND*
Ga0139557_100055125	F101131	GGA	MKKLCIDCKYYKKYYGYGGSNGIYDECLCPLVIKEKDFVRGVIHRSFCMYERLSHSGCGPDAKYFEQYEPPVPDKPWWTQNLEKLKNLLG*
Ga0139557_100055126	F051884	N/A	MNETHDDAPWLDTKYDGFDEEQIKKVLKAQRQAQKLLDAAHRVADGEVPLGKLIRLGHKDPMSVRVRYEYGAILLALVEECAYMKDGLTLVNVRDILDIIEVLNNE*
Ga0139557_100055130	F034175	AGGAGG	VNKDCYKPTIEERVARLEDENIETNNMLYELSIDIDMLKIRIQTLENLVIGDGK*
Ga0139557_100055132	F006658	GAGG	MTKPFGFNEPASQYIPKPSAVSTGELTDSPKFQEELSKKNTLGDMLNSPEMIKMQEDLAKAHKDSIDSSVGWYYNLSSEDKYKAVEALCHIICKAEHQGTSHRGLMDTLGVYPEAFWIDHLMDLHNAMWTYYHDKKQITDFEEDMNTLQP*
Ga0139557_10005517	F018714	GGA	MTNTEYYKTLVVGAIIGASITILAFYMLKPEPQNHTVTPKTNFAVVDTYKDCNVIRWTDGMQAEFKYFLDCSK*