Scaffold Ga0139557_1000547

Overview

Basic Information

• Taxon OID: 3300011010
• Scaffold ID: Ga0139557_1000547
• Source Dataset Name: Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8949
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.825
  • Long. (^o): -82.975

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011488	Metagenome / Metatranscriptome	290	Y
F012977	Metagenome / Metatranscriptome	275	Y
F033041	Metagenome / Metatranscriptome	178	Y
F044502	Metagenome	154	Y
F058996	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0139557_100054711	F011488	N/A	MSMTNEELIEELYHKAHAKGFFHELHDKVGEIKKSGIRECEHRLVQKAYSELKKIKLAQPVSQS*
Ga0139557_100054717	F012977	N/A	MENNFIYNLSETEYLVFKSQRDYFELFSGHEGSSVNSKLATFRGGKWYFEDFHQQKLFWFLFNIYKKDFGKALKQYIRSLQDKPKTYMITCAKRRVDIKITKMRRNMWDWIYGTFYGR*
Ga0139557_10005475	F044502	N/A	MKERGGFVTPLSYIDDMMKEQDKFNGLSKGQVKQIIRRNMITKTAPSKKNYSRKNLKKDLEN*
Ga0139557_10005476	F033041	N/A	MEKIKINTNYKFTFDTDVELRRAQSSGYIESYDMVRICIKRLDNGNQVDFPIKSREDYFDQVASLNERSNEYEMVEIYQDTHSFNMYDYI*
Ga0139557_10005477	F058996	N/A	MKKTNVITPMWHNCQSILKSGDLELADNKLMEFVWKLADYTMQGFKDADVIEGAKLETWKERVWFAIENAGLLPE*