Scaffold Ga0139557_1000288

Overview

Basic Information

• Taxon OID: 3300011010
• Scaffold ID: Ga0139557_1000288
• Source Dataset Name: Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12548
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (68.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.825
  • Long. (^o): -82.975

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001280	Metagenome / Metatranscriptome	732	Y
F038669	Metagenome / Metatranscriptome	165	Y
F051117	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0139557_100028811	F038669	GGAG	MSYKDTLLEPHLQKLVDLGESGTDIMHGHMKNLMYECETKLSDISELQDNPEYKYLSGRMEALTEIYIMTYNLAFAINERTVSRG*
Ga0139557_100028825	F051117	N/A	MHDHEFKLDMDGQVTCANCGAMGDDMPNPQPDLNNAGYGYDELKDFDEYKNNNKKKITPFMGPNR*
Ga0139557_100028832	F001280	AGG	MCYECGCESVGSTTGIVPVTITDASRDGEAGLTLNMTATPEQRTSFINE*