Basic Information | |
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Taxon OID | 3300011010 Open in IMG/M |
Scaffold ID | Ga0139557_1000288 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12548 |
Total Scaffold Genes | 35 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (68.57%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Ontario, Canada | |||||||
Coordinates | Lat. (o) | 41.825 | Long. (o) | -82.975 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F001280 | Metagenome / Metatranscriptome | 732 | Y |
F038669 | Metagenome / Metatranscriptome | 165 | Y |
F051117 | Metagenome / Metatranscriptome | 144 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0139557_100028811 | F038669 | GGAG | MSYKDTLLEPHLQKLVDLGESGTDIMHGHMKNLMYECETKLSDISELQDNPEYKYLSGRMEALTEIYIMTYNLAFAINERTVSRG* |
Ga0139557_100028825 | F051117 | N/A | MHDHEFKLDMDGQVTCANCGAMGDDMPNPQPDLNNAGYGYDELKDFDEYKNNNKKKITPFMGPNR* |
Ga0139557_100028832 | F001280 | AGG | MCYECGCESVGSTTGIVPVTITDASRDGEAGLTLNMTATPEQRTSFINE* |
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