Scaffold Ga0139557_1000231

Overview

Basic Information

• Taxon OID: 3300011010
• Scaffold ID: Ga0139557_1000231
• Source Dataset Name: Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14217
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (72.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.825
  • Long. (^o): -82.975

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047683	Metagenome	149	N
F077219	Metagenome	117	N
F101159	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0139557_100023123	F077219	N/A	MTELLEKLKTVFSVTEPGLVIDKDFLQLREDMKARLNQGSRNDFKFTKDVDCLVLEEWLIKKNIVFGPLSEHLTKNGACVYDVRIDEAFIDFKCLDEKLNYNVSEQKMKTHPWVQEGIDNGLLTHYCFYRMHRPEDRPLQENDVVTFELINVLNAQTVVDSLMPSQFNGKYYKVEKYV*
Ga0139557_10002314	F047683	N/A	MPNYGRMILSVEKEYIMNLTIEQIESTYAVPADATRQNYYPVRAYWIPIELREQVLAAYRETNTRVRLRYRGPRSVSIGREMTRNDKTTYLRSRHRAMQDCLIADATHFTVYDYTSR*
Ga0139557_10002315	F101159	N/A	MMMKRKNTMLTLRDINTATGSKDACIYSDLYKDVYGCRPYNPTFESVEAFDADFEELSRLLDKEIESEAEYQQIYFDKFVARVQETMEIVQGATRERAIEIIADAEGIRAAEFDFYGLEILEHELNLKFGSIARWLSE*